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Hen Egg White Lysozyme E35Q chitopentaose complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H6M PDB ENTRY 1H6M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 PROTEIN AT 7MG ML-1 IN 10MM CHITOPENTAOSE 200MM NA ACETATE PH5 WAS MIXED WITH RESERVOIR OF 200MM NA ACETATE, 4% W/V NACL PH4.5
Crystal Properties Matthews coefficient Solvent content 1.7 27.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.632 α = 90 b = 78.632 β = 90 c = 36.7 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 93 0.05 40 7 11116 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 95 0.28 6.4 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H6M 1.8 14.76 9628 507 91.2 0.157 0.155 0.1618 0.196 0.2082 RANDOM 14.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.09 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_3_deg 13.711 r_dihedral_angle_4_deg 11.961 r_dihedral_angle_1_deg 5.989 r_scangle_it 5.609 r_scbond_it 3.678 r_mcangle_it 2.246 r_angle_other_deg 1.495 r_angle_refined_deg 1.453 r_mcbond_it 1.415
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_3_deg 13.711 r_dihedral_angle_4_deg 11.961 r_dihedral_angle_1_deg 5.989 r_scangle_it 5.609 r_scbond_it 3.678 r_mcangle_it 2.246 r_angle_other_deg 1.495 r_angle_refined_deg 1.453 r_mcbond_it 1.415 r_chiral_restr 0.12 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling