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Extended Tudor domain of Drosophila Melanogaster Tudor-SN (p100)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HQE PDB ENTRY 2HQE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 20% PEG 3350, 100 MM BIS-TRIS PH 5.5, 200 MM NACL
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.56 α = 90 b = 47.04 β = 107.32 c = 129.77 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 19.64 98.7 0.04 24.4 3.63 28296 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.22 97.8 0.15 10.2 3.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HQE 2.1 19.64 26881 1415 98.7 0.229 0.227 0.2253 0.269 0.2664 RANDOM 25.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.55 0.48 -0.88 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.706 r_dihedral_angle_4_deg 16.737 r_dihedral_angle_3_deg 13.034 r_dihedral_angle_1_deg 5.793 r_angle_refined_deg 1.037 r_scangle_it 0.78 r_scbond_it 0.467 r_mcangle_it 0.39 r_mcbond_it 0.306 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.706 r_dihedral_angle_4_deg 16.737 r_dihedral_angle_3_deg 13.034 r_dihedral_angle_1_deg 5.793 r_angle_refined_deg 1.037 r_scangle_it 0.78 r_scbond_it 0.467 r_mcangle_it 0.39 r_mcbond_it 0.306 r_nbtor_refined 0.29 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.125 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3384 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHASER phasing