☰ Navigation Tabs
FACTOR INHIBITING HIF-1 ALPHA WITH N,3-dihydroxybenzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H2N PDB ENTRY 1H2N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.5M AMMONIUM SULFATE, 100MM HEPES PH 7.5, 3% PEG400, 1MM FESO4, 28MB/ML PROTEIN, 10MM SUBSTRATE. CRYSTALS ARE DEEP RED.
Crystal Properties Matthews coefficient Solvent content 3.68 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.115 α = 90 b = 87.115 β = 90 c = 150.91 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH RH COATED MIRROR 2004-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 37.77 99 0.11 16.8 9.1 20923 77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.62 93.4 0.83 1.8 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H2N 2.5 75.38 19768 1039 99.93 0.2139 0.21124 0.2117 0.26672 0.271 RANDOM 41.511
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.651 r_dihedral_angle_4_deg 18.521 r_dihedral_angle_3_deg 18.135 r_dihedral_angle_1_deg 7.626 r_scangle_it 3.952 r_scbond_it 2.579 r_angle_refined_deg 1.822 r_mcangle_it 1.72 r_mcbond_it 1.061 r_angle_other_deg 1.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.651 r_dihedral_angle_4_deg 18.521 r_dihedral_angle_3_deg 18.135 r_dihedral_angle_1_deg 7.626 r_scangle_it 3.952 r_scbond_it 2.579 r_angle_refined_deg 1.822 r_mcangle_it 1.72 r_mcbond_it 1.061 r_angle_other_deg 1.009 r_symmetry_hbond_refined 0.33 r_symmetry_vdw_other 0.322 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.247 r_nbd_other 0.211 r_mcbond_other 0.209 r_nbtor_refined 0.199 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.099 r_nbtor_other 0.095 r_xyhbond_nbd_other 0.046 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2726 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling