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Oxidized structure of the first GAF domain of Mycobacterium tuberculosis DosS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG4000 AND 0.2 M CALCIUM CHLORIDE IN TRIS-HCL, PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.14 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36 α = 90 b = 86.865 β = 90 c = 100.642 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 96.8 0.07 26 6.7 41345 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 22.56 39191 2088 96.8 0.20132 0.19957 0.1973 0.23404 0.2337 RANDOM 17.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.85 r_dihedral_angle_4_deg 18.464 r_dihedral_angle_3_deg 12.939 r_dihedral_angle_1_deg 5.769 r_scangle_it 5.596 r_scbond_it 3.894 r_mcangle_it 2.584 r_mcbond_it 1.729 r_angle_refined_deg 1.427 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.85 r_dihedral_angle_4_deg 18.464 r_dihedral_angle_3_deg 12.939 r_dihedral_angle_1_deg 5.769 r_scangle_it 5.596 r_scbond_it 3.894 r_mcangle_it 2.584 r_mcbond_it 1.729 r_angle_refined_deg 1.427 r_nbtor_refined 0.3 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2244 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing