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A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc
Crystallization Crystal Properties Matthews coefficient Solvent content 2.13 41.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.17 α = 90 b = 91.17 β = 90 c = 132.607 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.89 98.6 0.1 10.4 6.97 43009 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2 20 40848 2160 98.56 0.17143 0.16915 0.1744 0.2133 RANDOM 19.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.07 -0.13 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.522 r_dihedral_angle_3_deg 13.094 r_dihedral_angle_4_deg 7.761 r_dihedral_angle_1_deg 7.054 r_scangle_it 3.114 r_scbond_it 2.137 r_angle_refined_deg 1.508 r_mcangle_it 1.425 r_mcbond_it 0.938 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.522 r_dihedral_angle_3_deg 13.094 r_dihedral_angle_4_deg 7.761 r_dihedral_angle_1_deg 7.054 r_scangle_it 3.114 r_scbond_it 2.137 r_angle_refined_deg 1.508 r_mcangle_it 1.425 r_mcbond_it 0.938 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.258 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.111 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4498 Nucleic Acid Atoms Solvent Atoms 701 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement