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Crystal structure of the C-terminal WD40 domain of human PALB2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100 MM MES PH 6.0, 50 MM KH2PO4, 12-20% (W/V) PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.78 α = 90 b = 64.65 β = 109.65 c = 77.25 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD HORIZONTALLY BENDED GE(220) 2007-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.27 94.1 0.06 11.2 4 54291 27.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 75.4 0.58 2.7 3.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 1.9 49.265 0.95 29655 2742 93.55 0.2109 0.2089 0.2044 0.2464 0.2412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.63 3.7163 6.7099 -3.0799
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.68 f_angle_d 1.47 f_chiral_restr 0.1 f_bond_d 0.01 f_plane_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2320 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 30
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SHARP phasing PHENIX refinement