2W0V

Crystal structure of Glmu from Haemophilus influenzae in complex with quinazoline inhibitor 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
11.7 M AMMONIUM SULFATE, 2% PEG 400, 0.1M MES PH 5.4-6.1.
Crystal Properties
Matthews coefficientSolvent content
3.564.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.821α = 90
b = 108.821β = 90
c = 326.85γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-03-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122090.50.0622.365.5246320
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0787.30.42.475

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2V0H1.99111.843967235290.30.20.1980.232RANDOM27.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.430.87-1.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.743
r_scangle_it2.452
r_scbond_it1.396
r_angle_refined_deg1.111
r_mcangle_it0.903
r_angle_other_deg0.715
r_mcbond_it0.469
r_symmetry_vdw_other0.288
r_nbd_other0.223
r_nbd_refined0.185
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.743
r_scangle_it2.452
r_scbond_it1.396
r_angle_refined_deg1.111
r_mcangle_it0.903
r_angle_other_deg0.715
r_mcbond_it0.469
r_symmetry_vdw_other0.288
r_nbd_other0.223
r_nbd_refined0.185
r_symmetry_vdw_refined0.136
r_symmetry_hbond_refined0.126
r_xyhbond_nbd_refined0.115
r_nbtor_other0.077
r_chiral_restr0.069
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3415
Nucleic Acid Atoms
Solvent Atoms283
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing