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CRYSTAL STRUCTURE OF THE MUTANT H8P FROM THE RECOMBINANT VARIABLE DOMAIN 6JAL2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CD0 PDB ENTRY 2CD0
Crystallization Crystal Properties Matthews coefficient Solvent content 2.84 56.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.94 α = 90 b = 85.495 β = 91.2 c = 69.152 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 53.7 78.8 0.04 16.1 1.6 22584
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 43.9 0.1 6.6 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CD0 2.2 35.56 19558 1056 85.1 0.208 0.206 0.2052 0.245 0.2438 RANDOM 20.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.118 r_dihedral_angle_3_deg 16.252 r_dihedral_angle_4_deg 14.279 r_dihedral_angle_1_deg 12.056 r_scangle_it 3.1 r_scbond_it 2.132 r_angle_refined_deg 2.054 r_mcangle_it 1.855 r_mcbond_it 1.101 r_xyhbond_nbd_refined 0.421
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.118 r_dihedral_angle_3_deg 16.252 r_dihedral_angle_4_deg 14.279 r_dihedral_angle_1_deg 12.056 r_scangle_it 3.1 r_scbond_it 2.132 r_angle_refined_deg 2.054 r_mcangle_it 1.855 r_mcbond_it 1.101 r_xyhbond_nbd_refined 0.421 r_symmetry_vdw_refined 0.347 r_nbtor_refined 0.3 r_nbd_refined 0.285 r_chiral_restr 0.181 r_symmetry_hbond_refined 0.165 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3348 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing