X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
172M TRI-AMMONIUM CITRATE, 0.1M BIS-TRIS PROPANE PH7, pH 7.0
Crystal Properties
Matthews coefficientSolvent content
1.5822.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.166α = 90
b = 41.166β = 90
c = 107.915γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77CCDMARMOSAIC 225 mm CCDMIRRORS2007-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.585099.90.0126.719.580661
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.581.6410012.319.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2VVK1.5835.65764536999.990.189510.188120.21907RANDOM13.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.540.270.54-0.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.739
r_dihedral_angle_1_deg17.584
r_dihedral_angle_4_deg13.963
r_dihedral_angle_3_deg13.171
r_scangle_it3.361
r_scbond_it2.361
r_angle_refined_deg1.597
r_mcangle_it1.531
r_mcbond_it1.294
r_angle_other_deg0.967
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.739
r_dihedral_angle_1_deg17.584
r_dihedral_angle_4_deg13.963
r_dihedral_angle_3_deg13.171
r_scangle_it3.361
r_scbond_it2.361
r_angle_refined_deg1.597
r_mcangle_it1.531
r_mcbond_it1.294
r_angle_other_deg0.967
r_symmetry_vdw_other0.268
r_symmetry_vdw_refined0.255
r_nbd_other0.211
r_nbd_refined0.198
r_nbtor_refined0.189
r_xyhbond_nbd_refined0.118
r_chiral_restr0.096
r_nbtor_other0.092
r_symmetry_hbond_refined0.082
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.007
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms570
Nucleic Acid Atoms
Solvent Atoms42
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing