2VO8

Cohesin module from Clostridium perfringens ATCC13124 family 33 glycoside hydrolase.


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.8940.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.088α = 90
b = 38.088β = 90
c = 174.851γ = 90
Symmetry
Space GroupP 43 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113IMAGE PLATERIGAKU RAXIS-IVOSMIC BLUEMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-002

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.743.7393.80.0512.93.8134792

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTNONE1.743.731347971393.80.2170.2140.258RANDOM17.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.210.21-0.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.012
r_dihedral_angle_4_deg26.52
r_dihedral_angle_3_deg14.084
r_dihedral_angle_1_deg7.573
r_scangle_it3.416
r_scbond_it2.762
r_angle_refined_deg1.881
r_mcangle_it1.567
r_mcbond_it1.386
r_angle_other_deg0.978
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.012
r_dihedral_angle_4_deg26.52
r_dihedral_angle_3_deg14.084
r_dihedral_angle_1_deg7.573
r_scangle_it3.416
r_scbond_it2.762
r_angle_refined_deg1.881
r_mcangle_it1.567
r_mcbond_it1.386
r_angle_other_deg0.978
r_symmetry_vdw_refined0.364
r_xyhbond_nbd_refined0.207
r_nbd_refined0.196
r_nbd_other0.191
r_nbtor_refined0.165
r_symmetry_hbond_refined0.156
r_symmetry_vdw_other0.147
r_chiral_restr0.115
r_nbtor_other0.091
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1024
Nucleic Acid Atoms
Solvent Atoms164
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
d*TREKdata scaling