2VO1

CRYSTAL STRUCTURE OF THE SYNTHETASE DOMAIN OF HUMAN CTP SYNTHETASE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8544.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.42α = 90
b = 98.42β = 90
c = 120.57γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2005-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.82099.60.215.314.315092
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.91001.132.914.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1S1M2.876.251433375799.60.2040.2010.259RANDOM32.86
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.510.51-1.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.783
r_dihedral_angle_3_deg16.793
r_dihedral_angle_4_deg15.835
r_dihedral_angle_1_deg6.514
r_scangle_it1.381
r_angle_refined_deg1.272
r_scbond_it0.902
r_angle_other_deg0.869
r_mcangle_it0.573
r_mcbond_it0.483
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.783
r_dihedral_angle_3_deg16.793
r_dihedral_angle_4_deg15.835
r_dihedral_angle_1_deg6.514
r_scangle_it1.381
r_angle_refined_deg1.272
r_scbond_it0.902
r_angle_other_deg0.869
r_mcangle_it0.573
r_mcbond_it0.483
r_symmetry_vdw_refined0.232
r_nbd_refined0.219
r_symmetry_vdw_other0.202
r_nbd_other0.187
r_nbtor_refined0.179
r_symmetry_hbond_refined0.141
r_xyhbond_nbd_refined0.114
r_nbtor_other0.084
r_chiral_restr0.069
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3613
Nucleic Acid Atoms
Solvent Atoms14
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing