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Crystal structure of rat profilin 2a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V8F PDB ENTRY 2V8F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 2M AMMONIUM SULPHATE, 1M NACL, PH 4.5
Crystal Properties Matthews coefficient Solvent content 2.9 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.1 α = 90 b = 51.1 β = 90 c = 67.52 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99 0.07 12.7 3.1 18939 -3 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 99.8 0.52 2.2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V8F 1.7 17.45 17987 946 99 0.175 0.173 0.1802 0.216 0.2224 RANDOM 17.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.112 r_dihedral_angle_4_deg 24.378 r_dihedral_angle_3_deg 14.35 r_scangle_it 7.733 r_dihedral_angle_1_deg 7.687 r_scbond_it 5.884 r_mcangle_it 3.217 r_mcbond_it 2.487 r_angle_refined_deg 1.838 r_angle_other_deg 1.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.112 r_dihedral_angle_4_deg 24.378 r_dihedral_angle_3_deg 14.35 r_scangle_it 7.733 r_dihedral_angle_1_deg 7.687 r_scbond_it 5.884 r_mcangle_it 3.217 r_mcbond_it 2.487 r_angle_refined_deg 1.838 r_angle_other_deg 1.095 r_symmetry_vdw_other 0.28 r_nbd_refined 0.224 r_nbd_other 0.222 r_symmetry_hbond_refined 0.191 r_nbtor_refined 0.188 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.124 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1058 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing