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Alditol Oxidase from Streptomyces coelicolor A3(2): Native Enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.79 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.023 α = 90 b = 68.614 β = 95.15 c = 57.977 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 57.7 100 0.01 9 3.6 167187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 100 0.43 3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.1 57.74 158802 8384 100 0.14 0.139 0.1478 0.165 0.1722 RANDOM 6.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.16 -0.02 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.418 r_dihedral_angle_4_deg 19.798 r_dihedral_angle_3_deg 10.81 r_dihedral_angle_1_deg 6.449 r_scangle_it 3.161 r_scbond_it 2.388 r_angle_refined_deg 1.719 r_mcangle_it 1.668 r_mcbond_it 1.386 r_angle_other_deg 1.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.418 r_dihedral_angle_4_deg 19.798 r_dihedral_angle_3_deg 10.81 r_dihedral_angle_1_deg 6.449 r_scangle_it 3.161 r_scbond_it 2.388 r_angle_refined_deg 1.719 r_mcangle_it 1.668 r_mcbond_it 1.386 r_angle_other_deg 1.321 r_symmetry_vdw_other 0.278 r_nbd_refined 0.249 r_nbd_other 0.219 r_symmetry_hbond_refined 0.213 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.117 r_chiral_restr 0.104 r_nbtor_other 0.084 r_gen_planes_refined 0.032 r_gen_planes_other 0.019 r_bond_other_d 0.016 r_bond_refined_d 0.015 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3136 Nucleic Acid Atoms Solvent Atoms 860 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing