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The structure of Mycobacterium marinum arylamine N-acetyltransferase in complex with CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VFB PDB ENTRY 2VFB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.1M NA CITRATE PH5.6, 10% W/V 2-PROPANOL AND 22% PEG 4,000
Crystal Properties Matthews coefficient Solvent content 1.86 33.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.95 α = 90 b = 98 β = 90 c = 123.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 24.88 97.3 0.16 4.27 5.27 16557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 88.1 0.4 1.8 3.39
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 2VFB 2.7 30.23 16517 844 97.1 0.185 0.181 0.1747 0.254 0.2423 RANDOM 5.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.404 0.993 -1.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.425 r_dihedral_angle_4_deg 22.021 r_dihedral_angle_3_deg 18.638 r_dihedral_angle_1_deg 9.421 r_scangle_it 2.869 r_angle_refined_deg 1.936 r_scbond_it 1.642 r_mcangle_it 1.084 r_mcbond_it 0.612 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.425 r_dihedral_angle_4_deg 22.021 r_dihedral_angle_3_deg 18.638 r_dihedral_angle_1_deg 9.421 r_scangle_it 2.869 r_angle_refined_deg 1.936 r_scbond_it 1.642 r_mcangle_it 1.084 r_mcbond_it 0.612 r_nbtor_refined 0.314 r_nbd_refined 0.234 r_symmetry_hbond_refined 0.217 r_symmetry_vdw_refined 0.181 r_chiral_restr 0.172 r_xyhbond_nbd_refined 0.17 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4179 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing