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Myosin VI (MD-insert2-CaM, Delta-Insert1) Post-rigor state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BKH PDB ENTRY 2BKH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8% PEG 8000, 50MM GLYCINE PH 9.5, 6% MPD
Crystal Properties Matthews coefficient Solvent content 3.18 53.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.42 α = 90 b = 100.47 β = 90 c = 174.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 48.97 100 0.1 17.2 8.2 51218 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100 0.38 6.6 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BKH 2.4 48.28 48522 2628 100 0.219 0.217 0.2132 0.256 RANDOM 31.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 -0.89 1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.16 r_dihedral_angle_3_deg 16.872 r_dihedral_angle_4_deg 16.77 r_dihedral_angle_1_deg 6.554 r_scangle_it 2.471 r_scbond_it 1.548 r_angle_refined_deg 1.222 r_mcangle_it 1.034 r_mcbond_it 0.806 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.16 r_dihedral_angle_3_deg 16.872 r_dihedral_angle_4_deg 16.77 r_dihedral_angle_1_deg 6.554 r_scangle_it 2.471 r_scbond_it 1.548 r_angle_refined_deg 1.222 r_mcangle_it 1.034 r_mcbond_it 0.806 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.126 r_symmetry_hbond_refined 0.123 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7023 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing