2V72

The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2244.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.265α = 90
b = 45.86β = 90
c = 69.003γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.252093.60.099.24.3463092
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.3198.60.264.14.21

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2520566863693.60.2580.2510.325RANDOM49.76
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.62-2.29-0.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg47.857
r_dihedral_angle_4_deg17.018
r_dihedral_angle_3_deg16.242
r_dihedral_angle_1_deg5.947
r_scangle_it1.4
r_angle_refined_deg1.253
r_scbond_it0.904
r_mcangle_it0.698
r_mcbond_it0.408
r_nbtor_refined0.297
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg47.857
r_dihedral_angle_4_deg17.018
r_dihedral_angle_3_deg16.242
r_dihedral_angle_1_deg5.947
r_scangle_it1.4
r_angle_refined_deg1.253
r_scbond_it0.904
r_mcangle_it0.698
r_mcbond_it0.408
r_nbtor_refined0.297
r_symmetry_hbond_refined0.229
r_nbd_refined0.192
r_symmetry_vdw_refined0.153
r_xyhbond_nbd_refined0.139
r_chiral_restr0.091
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1022
Nucleic Acid Atoms
Solvent Atoms42
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling
MOLREPphasing