2V6X

Stractural insight into the interaction between ESCRT-III and Vps4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.1M HEPES(PH7.0), 2.0M AMMONIUM SULFATE
Crystal Properties
Matthews coefficientSolvent content
2.236.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.145α = 90
b = 82.27β = 90
c = 21.474γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMARRESEARCH2007-01-26MMAD
21x-rayCCDADSC CCDM
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.8726, 0.9392ESRFID23-1
2SYNCHROTRONESRF BEAMLINE ID23-20.9792, 0.9796ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1256.6199.80.1213.45.2399972
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.021000.444.285.31

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTNONE1.9856.61948347798.60.20.1980.228RANDOM19.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.951.52-0.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.799
r_dihedral_angle_3_deg15.331
r_dihedral_angle_4_deg8.964
r_dihedral_angle_1_deg5.193
r_scangle_it3.85
r_scbond_it2.731
r_mcangle_it1.372
r_angle_refined_deg1.334
r_mcbond_it0.934
r_symmetry_vdw_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.799
r_dihedral_angle_3_deg15.331
r_dihedral_angle_4_deg8.964
r_dihedral_angle_1_deg5.193
r_scangle_it3.85
r_scbond_it2.731
r_mcangle_it1.372
r_angle_refined_deg1.334
r_mcbond_it0.934
r_symmetry_vdw_refined0.305
r_nbtor_refined0.291
r_nbd_refined0.201
r_chiral_restr0.104
r_symmetry_hbond_refined0.102
r_xyhbond_nbd_refined0.095
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms979
Nucleic Acid Atoms
Solvent Atoms32
Heterogen Atoms5

Software

Software
Software NamePurpose
SCALAdata reduction
TRUNCATEdata scaling
SHARPphasing
ARP/wARPphasing
REFMACrefinement