2V4X

Crystal Structure of Jaagsiekte Sheep Retrovirus Capsid N-terminal domain


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.0741

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 29.595α = 90
b = 57.826β = 109.17
c = 40.927γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.1SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.52098.80.0816.9520920
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5590.20.42.94.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.514.7919678106799.20.1520.150.185RANDOM7.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.490.98-0.64-0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.542
r_dihedral_angle_4_deg17.31
r_dihedral_angle_3_deg13.156
r_dihedral_angle_1_deg4.626
r_scangle_it2.837
r_scbond_it2.015
r_angle_refined_deg1.177
r_mcangle_it0.993
r_angle_other_deg0.871
r_mcbond_it0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.542
r_dihedral_angle_4_deg17.31
r_dihedral_angle_3_deg13.156
r_dihedral_angle_1_deg4.626
r_scangle_it2.837
r_scbond_it2.015
r_angle_refined_deg1.177
r_mcangle_it0.993
r_angle_other_deg0.871
r_mcbond_it0.79
r_symmetry_vdw_other0.234
r_nbd_refined0.228
r_nbtor_refined0.193
r_nbd_other0.182
r_symmetry_vdw_refined0.18
r_xyhbond_nbd_refined0.132
r_symmetry_hbond_refined0.119
r_nbtor_other0.085
r_chiral_restr0.069
r_bond_refined_d0.009
r_bond_other_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_scbond_other
r_symmetry_metal_ion_refined
r_metal_ion_refined
r_mcbond_other
r_xyhbond_nbd_other
r_mcangle_other
r_metal_ion_other
r_symmetry_metal_ion_other
r_symmetry_hbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1043
Nucleic Acid Atoms
Solvent Atoms201
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing