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STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.74 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.7 α = 90 b = 75.7 β = 90 c = 395.11 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 15 99.3 0.06 15.41 5 12348 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.2 99.3 0.25 4.52 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 3.1 15 12348 636 99.7 0.257 0.254 0.2545 0.297 0.2673 RANDOM 102.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.07 2.54 5.07 -7.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.333 r_dihedral_angle_3_deg 27.545 r_dihedral_angle_4_deg 24.347 r_scangle_it 14.822 r_dihedral_angle_1_deg 12.51 r_scbond_it 12.113 r_mcangle_it 3.893 r_mcbond_it 2.515 r_angle_refined_deg 1.147 r_nbd_refined 0.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.333 r_dihedral_angle_3_deg 27.545 r_dihedral_angle_4_deg 24.347 r_scangle_it 14.822 r_dihedral_angle_1_deg 12.51 r_scbond_it 12.113 r_mcangle_it 3.893 r_mcbond_it 2.515 r_angle_refined_deg 1.147 r_nbd_refined 0.357 r_nbtor_refined 0.339 r_xyhbond_nbd_refined 0.285 r_symmetry_hbond_refined 0.285 r_symmetry_vdw_refined 0.232 r_chiral_restr 0.101 r_gen_planes_refined 0.01 r_bond_refined_d 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3019 Nucleic Acid Atoms 896 Solvent Atoms 8 Heterogen Atoms 28
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing autoSHARP phasing REFMAC refinement