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Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 37
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q0B PDB ENTRY 1Q0B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100 MM BIS-TRIS (PH 6.0), 200 MM AMMONIUM SULFATE AND 18-20% PEG3350. 10 MM SRCL2
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.79 α = 90 b = 80.452 β = 96.16 c = 68.831 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD ADSC CCD 2006-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.6 0.1 13 3.7 49950 1.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 96.2 0.61 1.8 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q0B 2.11 49.45 47209 2559 98.8 0.22 0.217 0.274 0.2593 RANDOM 31.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 -1.77 -1.54 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.409 r_dihedral_angle_4_deg 18.873 r_dihedral_angle_3_deg 17.19 r_dihedral_angle_1_deg 6.227 r_scangle_it 2.777 r_scbond_it 1.762 r_angle_refined_deg 1.583 r_mcangle_it 1.442 r_mcbond_it 0.847 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.409 r_dihedral_angle_4_deg 18.873 r_dihedral_angle_3_deg 17.19 r_dihedral_angle_1_deg 6.227 r_scangle_it 2.777 r_scbond_it 1.762 r_angle_refined_deg 1.583 r_mcangle_it 1.442 r_mcbond_it 0.847 r_nbtor_refined 0.298 r_symmetry_hbond_refined 0.26 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.105 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5198 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing