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Crystal structure of the rat FGF1-sucrose octasulfate (SOS) complex.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J3P PDB ENTRY 2J3P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 10% PEG-6000, 0.1 M CITRIC ACID PH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.39 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.883 α = 90 b = 52.778 β = 97.43 c = 73.127 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH 2006-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 42.68 99.9 0.05 12.8 3.8 14319 4.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.17 4.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J3P 2.2 42.68 13571 718 99.9 0.21 0.206 0.2061 0.277 0.2793 RANDOM 22.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.07 0.36 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.135 r_dihedral_angle_3_deg 19.421 r_dihedral_angle_4_deg 18.408 r_scbond_it 15.685 r_scangle_it 15.542 r_mcangle_it 12.967 r_mcbond_it 12.408 r_dihedral_angle_1_deg 7.833 r_angle_refined_deg 1.518 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.135 r_dihedral_angle_3_deg 19.421 r_dihedral_angle_4_deg 18.408 r_scbond_it 15.685 r_scangle_it 15.542 r_mcangle_it 12.967 r_mcbond_it 12.408 r_dihedral_angle_1_deg 7.833 r_angle_refined_deg 1.518 r_nbtor_refined 0.32 r_nbd_refined 0.254 r_symmetry_vdw_refined 0.206 r_chiral_restr 0.166 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.115 r_bond_refined_d 0.022 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2083 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHASER phasing