2RVP

Solution structure of DNA Containing Metallo-Base-Pair

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-1, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-2, 2.1 mM AgNO3-3, 100 mM NaNO3-4	90% H2O/10% D2O	0.1	6.9	ambient atm	298
2	2D 1H-1H NOESY	2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-5, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-6, 2.1 mM AgNO3-7, 100 mM NaNO3-8	100% D2O	0.1		ambient atm	298
3	2D DQF-COSY	2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-5, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-6, 2.1 mM AgNO3-7, 100 mM NaNO3-8	100% D2O	0.1		ambient atm	298
4	2D 1H-13C HSQC	2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-5, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-6, 2.1 mM AgNO3-7, 100 mM NaNO3-8	100% D2O	0.1		ambient atm	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	950

NMR Refinement
Method	Details	Software
simulated annealing		Sparky

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
2	peak picking	Sparky		Goddard
3	data analysis	MARDIGRAS		Thomas L. James
4	structure solution	MARDIGRAS		Thomas L. James
5	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
6	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read