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Refined solution structure of the first RNA recognition motif domain in CPEB3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.06 mM [U-100% 13C; U-100% 15N] entity-1 90% H2O/10% D2O 120 7.0 ambient 298 2 3D 1H-13C NOESY 1.06 mM [U-100% 13C; U-100% 15N] entity-1 90% H2O/10% D2O 120 7.0 ambient 298 3 2D 1H-15N HSQC 1.06 mM [U-100% 13C; U-100% 15N] entity-1 90% H2O/10% D2O 120 7.0 ambient 298 4 2D 1H-13C HSQC 1.06 mM [U-100% 13C; U-100% 15N] entity-1 90% H2O/10% D2O 120 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker Biospin 2 processing NMRPipe 20030801 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView 5.0.4 Johnson, One Moon Scientific 4 data analysis KUJIRA 0.9843 Kobayashi, N 5 structure solution CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich 6 refinement Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman