2RSY

Solution structure of the SH2 domain of Csk in complex with a phosphopeptide from Cbp


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
22D 1H-15N HSQC0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
33D HNCACB0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
43D HNCACB0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
53D CBCA(CO)NH0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
63D CBCA(CO)NH0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
73D HNCO0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
83D HNCO0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
93D HN(CA)CO0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
103D HN(CA)CO0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
113D HBHA(CO)NH0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
123D HBHA(CO)NH0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
133D 1H-15N TOCSY0.5-1.0 mM [U-15N] Csk SH2 domain-7, 20 mM sodium phosphate-8, 50 mM sodium chloride-9, 0.5-1.0 mM Cbp phosphopeptide-10, 90 % H2O-11, 10 % [U-99% 2H] D2O-1290% H2O/10% D2O0.0766.0ambient298
143D 1H-15N TOCSY0.5-1.0 mM [U-15N] Cbp phosphopeptide-19, 20 mM sodium phosphate-20, 50 mM sodium chloride-21, 0.5-1.0 mM Csk SH2 domain-22, 90 % H2O-23, 10 % [U-99% 2H] D2O-2490% H2O/10% D2O0.0766.0ambient298
152D 1H-13C HSQC0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
162D 1H-13C HSQC0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
172D 1H-13C HSQC aromatic0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
182D 1H-13C HSQC aromatic0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
193D 1H-13C NOESY aromatic0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
203D 1H-13C NOESY aromatic0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
212D DQF-COSY0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
223D C(CO)NH0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
233D C(CO)NH0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
243D H(CCO)NH0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-1, 20 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5-1.0 mM Cbp phosphopeptide-4, 90 % H2O-5, 10 % [U-99% 2H] D2O-690% H2O/10% D2O0.0766.0ambient298
253D H(CCO)NH0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
263D HCCH-TOCSY0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
273D HCCH-TOCSY0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
283D 1H-15N NOESY0.5-1.0 mM [U-15N] Csk SH2 domain-7, 20 mM sodium phosphate-8, 50 mM sodium chloride-9, 0.5-1.0 mM Cbp phosphopeptide-10, 90 % H2O-11, 10 % [U-99% 2H] D2O-1290% H2O/10% D2O0.0766.0ambient298
293D 1H-15N NOESY0.5-1.0 mM [U-15N] Cbp phosphopeptide-19, 20 mM sodium phosphate-20, 50 mM sodium chloride-21, 0.5-1.0 mM Csk SH2 domain-22, 90 % H2O-23, 10 % [U-99% 2H] D2O-2490% H2O/10% D2O0.0766.0ambient298
303D 1H-13C NOESY0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
313D 1H-13C NOESY0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
322D CBHD0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
332D CBHD0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
342D CBHE0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
352D CBHE0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
363D 13C-filtered/13C-edited NOESY0.5-1.0 mM [U-13C; U-15N] Csk SH2 domain-25, 20 mM sodium phosphate-26, 50 mM sodium chloride-27, 0.5-1.0 mM Cbp phosphopeptide-28, 90 % H2O-29, 10 % [U-99% 2H] D2O-30100% D2O0.0766.0ambient298
373D 13C-filtered/13C-edited NOESY0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-31, 20 mM sodium phosphate-32, 50 mM sodium chloride-33, 0.5-1.0 mM Csk SH2 domain-34, 90 % H2O-35, 10 % [U-2H] D2O-36100% D2O0.0766.0ambient298
383D 13C,15N-filtered/15N-edited NOESY0.5-1.0 mM [U-13C; U-15N] Cbp phosphopeptide-13, 20 mM sodium phosphate-14, 50 mM sodium chloride-15, 0.5-1.0 mM Csk SH2 domain-16, 90 % H2O-17, 10 % [U-99% 2H] D2O-1890% H2O/10% D2O0.0766.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsXwinNMR
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMRBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingSparkyGoddard
4chemical shift assignmentSparkyGoddard
5data analysisSparkyGoddard
6data analysisTALOSCornilescu, Delaglio and Bax
7structure solutionCYANAGuntert, Mumenthaler and Wuthrich
8geometry optimizationMOLMOLKoradi, Billeter and Wuthrich
9refinementCYANA