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Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2mM [U-99% 15N] NVL2 N-terminal domain; 95% H2O/5% D2O 95% H2O/5% D2O 25 6.4 ambient 298 2 2D 1H-13C HSQC 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O 100% D2O 25 6.4 ambient 298 3 3D HNCACB 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O 100% D2O 25 6.4 ambient 298 4 3D H(CCO)NH 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O 100% D2O 25 6.4 ambient 298 5 3D 1H-15N NOESY 1.2mM [U-99% 15N] NVL2 N-terminal domain; 95% H2O/5% D2O 95% H2O/5% D2O 25 6.4 ambient 298 6 3D 1H-13C NOESY 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O 100% D2O 25 6.4 ambient 298 7 3D HNCO 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O 100% D2O 25 6.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500 2 Bruker DMX 800 3 GE AVANCE 600
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich 2 refinement CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich 3 refinement CNS 1.2 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 peak picking Sparky Goddard 6 chemical shift assignment Sparky Goddard