Structure of O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D DQF-COSY | 0.67mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.67mM ALPHA-L-FUCOSE; 90% H2O/10% D2O | 90% H2O/10% D2O | 0 | 5.3 | ambient | 300 | |
| 2 | 2D 1H-1H NOESY | 0.67mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.67mM ALPHA-L-FUCOSE; 90% H2O/10% D2O | 90% H2O/10% D2O | 0 | 5.3 | ambient | 300 | |
| 3 | 2D 1H-1H TOCSY | 0.67mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.67mM ALPHA-L-FUCOSE; 90% H2O/10% D2O | 90% H2O/10% D2O | 0 | 5.3 | ambient | 300 | |
| 4 | 2D 1H-1H TOCSY | 0.67mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.67mM ALPHA-L-FUCOSE; 100% D2O | 100% D2O | 0 | 5.3 | ambient | 300 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DGSA-distance geometry simulated annealing | Sugar ring was fixed in chair conformation. | CNS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using a combination NOE and D2O exchange experiment. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | 1.1 | |
