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Structure of the CC mismatch from the thymidylate synthase binding site 1 hairpin and analysis of its interaction with paromomycin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 3-5 mg/ml RNA 90% H2O/10% D2O and 100% D2O 293 2 2D 1H-1H TOCSY 3-5 mg/ml RNA 90% H2O/10% D2O and 100% D2O 293 3 2D 1H-1H COSY 3-5 mg/ml RNA 90% H2O/10% D2O and 100% D2O 293 4 2D 1H-13C HSQC 3-5 mg/ml RNA 90% H2O/10% D2O and 100% D2O 293 5 3D 1H-13C NOESY-HSQC 3-5 mg/ml [U-100% 13C; U-100% 15N] RNA 90% H2O/10% D2O and 100% D2O 293 6 3D HCCH-COSY 3-5 mg/ml [U-100% 13C; U-100% 15N] RNA 90% H2O/10% D2O and 100% D2O 293 7 3D HCCH-TOCSY 3-5 mg/ml [U-100% 13C; U-100% 15N] RNA 90% H2O/10% D2O and 100% D2O 293 8 2D 1H-15N HSQC 3-5 mg/ml [U-100% 13C; U-100% 15N] RNA 90% H2O/10% D2O and 100% D2O 278 9 3D 1H-15N NOESY-HSQC 3-5 mg/ml [U-100% 13C; U-100% 15N] RNA 90% H2O/10% D2O and 100% D2O 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Varian INOVA 800
NMR Refinement Method Details Software SIMULATED ANNEALING, MOLECULAR DYNAMICS X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH 2.19 SCHWIETERS, KUSZEWSKI, TJ 2 structure solution XwinNMR Bruker Biospin 3 structure solution NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 structure solution NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 peak picking NMRView Johnson, One Moon Scientific