2ROR

Solution structure of the VAV1 SH2 domain complexed with a tyrosine-phosphorylated peptide from SLP76


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY1.08mM [U-13C; U-15N] Proto-oncogene vav; 1.08mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O90% H2O/10% D2O1207.0ambient296
23D 1H-13C NOESY1.08mM [U-13C; U-15N] Proto-oncogene vav; 1.08mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O90% H2O/10% D2O1207.0ambient296
33D F1-15N,13C-filtered 15N-separated NOESY1.08mM [U-13C; U-15N] Proto-oncogene vav; 1.08mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O90% H2O/10% D2O1207.0ambient296
43D F1-15N,13C-filtered 13C-separated NOESY1.08mM [U-13C; U-15N] Proto-oncogene vav; 1.08mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O90% H2O/10% D2O1207.0ambient296
52D F2-15N,13C-filtered NOESY1.08mM [U-13C; U-15N] Proto-oncogene vav; 1.08mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O90% H2O/10% D2O1207.0ambient296
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsXwinNMR
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.6Bruker Biospin
2processingNMRPipe2.1Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisNMRView5.0.4Johnson, One Moon Scientific
4peak pickingNMRView5.0.4Johnson, One Moon Scientific
5chemical shift assignmentNMRView5.0.4Johnson, One Moon Scientific
6data analysisKUJIRA0.9837Kobayashi, N.
7peak pickingKUJIRA0.9837Kobayashi, N.
8chemical shift assignmentKUJIRA0.9837Kobayashi, N.
9structure solutionCYANA2.0.17Guntert, Mumenthaler and Wuthrich
10refinementCYANA2.0.17Guntert, Mumenthaler and Wuthrich