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Solution structure of the cap-binding domain of PARN complexed with the cap analog
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.5 mM [U-100% 13C; U-100% 15N] PARN, 2.5 mM M7GpppG 90% H2O/10% D2O 120 7.0 ambient 298 2 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N] PARN, 2.5 mM M7GpppG 90% H2O/10% D2O 120 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 20060702 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRView 5.0.4 Johnson, One Moon Scientific 3 peak picking NMRView 5.0.4 Johnson, One Moon Scientific 4 collection XwinNMR 3.5 Bruker Biospin 5 data analysis KUJIRA 0.9825 Naohiro Kobayashi 6 chemical shift assignment KUJIRA 0.9825 Naohiro Kobayashi 7 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 8 refinement Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm