2RMQ

Solution structure of fully modified 4'-thioDNA with the sequence of d(CGCGAATTCGCG)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D DQF-COSY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 100% D2O100% D2O206.5ambient298
22D 1H-1H TOCSY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 100% D2O100% D2O206.5ambient298
32D 1H-1H NOESY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 100% D2O100% D2O206.5ambient298
42D 1H-1H NOESY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 100% D2O100% D2O206.5ambient298
52D 1H-13C HSQC0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 100% D2O100% D2O206.5ambient298
62D 1H-1H NOESY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 95% H2O, 5% D2O95% H2O/5% D2O206.5ambient278
72D 1H-1H NOESY0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 95% H2O, 5% D2O95% H2O/5% D2O206.5ambient278
82D 1H-13C JR-HMBC0.42mM 4'-thio DNA; 10mM sodium phosphate; 10mM sodium chloride; 0.01mM DSS; 95% H2O, 5% D2O95% H2O/5% D2O206.5ambient278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX800
2BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealingXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number1
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.5Bruker Biospin
2collectionTopSpin1.0Bruker Biospin
3processingNMRPipe2.4Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4processingNMRDraw2.4Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5data analysisSparky3.111Goddard
6peak pickingSparky3.111Goddard
7structure solutionCNSSOLVE1.1Brunger, Adams, Clore, Gros, Nilges and Read
8refinementCNSSOLVE1.1Brunger, Adams, Clore, Gros, Nilges and Read