2RJM

3Ig structure of titin domains I67-I69 E-to-A mutated variant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6298pH 4.6, vapor diffusion, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5351.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.28α = 90
b = 86.48β = 104.94
c = 44.41γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2005-07-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.008SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121899.20.0813.7720955-331.382
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0284.30.4723.23.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB entry 2RIK21820955107199.560.1790.1760.228RANDOM30.876
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.680.92-0.95-1.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.075
r_dihedral_angle_4_deg20.132
r_dihedral_angle_3_deg14.739
r_dihedral_angle_1_deg6.518
r_scangle_it4.229
r_scbond_it2.698
r_angle_refined_deg1.599
r_mcangle_it1.565
r_mcbond_it1.019
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.075
r_dihedral_angle_4_deg20.132
r_dihedral_angle_3_deg14.739
r_dihedral_angle_1_deg6.518
r_scangle_it4.229
r_scbond_it2.698
r_angle_refined_deg1.599
r_mcangle_it1.565
r_mcbond_it1.019
r_nbtor_refined0.309
r_nbd_refined0.231
r_xyhbond_nbd_refined0.205
r_symmetry_hbond_refined0.201
r_symmetry_vdw_refined0.171
r_chiral_restr0.111
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2186
Nucleic Acid Atoms
Solvent Atoms206
Heterogen Atoms

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
CCP4phasing