☰ Navigation Tabs
Crystal structure of Cryptosporidium parvum small GTPase RAB1A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F9L PDB entry 2F9L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297 0.2M CaCl2, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 3.77 67.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.385 α = 90 b = 107.385 β = 90 c = 45.226 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97942 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 50 99.6 0.088 0.088 9.8 6 18805 18805 25.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.06 2.13 99.5 0.321 0.321 4.92 4.7 1838
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2F9L 2.06 50 18186 18186 601 99.41 0.18064 0.18064 0.17969 0.1786 0.2089 0.2018 RANDOM 27.802
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 0.51 1.01 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.525 r_dihedral_angle_3_deg 12.926 r_dihedral_angle_4_deg 10.955 r_dihedral_angle_1_deg 5.462 r_scangle_it 3.104 r_scbond_it 2.054 r_mcangle_it 1.4 r_angle_refined_deg 1.155 r_mcbond_it 0.793 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.525 r_dihedral_angle_3_deg 12.926 r_dihedral_angle_4_deg 10.955 r_dihedral_angle_1_deg 5.462 r_scangle_it 3.104 r_scbond_it 2.054 r_mcangle_it 1.4 r_angle_refined_deg 1.155 r_mcbond_it 0.793 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.196 r_nbd_refined 0.188 r_symmetry_hbond_refined 0.126 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1296 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling PHASER phasing