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The crystal structure of PerR-Ox highlights 2-oxo-Histidine formation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.39 48.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.25 α = 82.05 b = 42.7 β = 79.98 c = 53.02 γ = 61.63
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 36 20162 20162
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.103
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.05 36 20162 18590 930 100 0.21595 0.21115 0.2109 0.30782 0.307 RANDOM 14.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.12 -0.1 0.75 -0.04 -0.36 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.98 r_dihedral_angle_4_deg 19.892 r_dihedral_angle_3_deg 18.153 r_dihedral_angle_1_deg 7.86 r_scangle_it 4.585 r_scbond_it 3.281 r_angle_refined_deg 2.393 r_mcangle_it 2.004 r_mcbond_it 1.362 r_nbtor_refined 0.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.98 r_dihedral_angle_4_deg 19.892 r_dihedral_angle_3_deg 18.153 r_dihedral_angle_1_deg 7.86 r_scangle_it 4.585 r_scbond_it 3.281 r_angle_refined_deg 2.393 r_mcangle_it 2.004 r_mcbond_it 1.362 r_nbtor_refined 0.329 r_symmetry_hbond_refined 0.29 r_nbd_refined 0.28 r_xyhbond_nbd_refined 0.279 r_symmetry_vdw_refined 0.228 r_chiral_restr 0.148 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2275 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction XSCALE data scaling PHASER phasing