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Crystal structure of human sulfotransferase 1C3 (Sult1C3) in complex with PAP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H8K PDB entry 2H8K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2M Diammonium tartrate, 0.1M MES, 18% PEG 2000, 5% Ethylene glycol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.55 51.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.23 α = 90 b = 93.23 β = 90 c = 146.43 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.97900 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 40 99.8 0.061 11.1 18.9 11518
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 98.7 0.978 14.1 1102
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2H8K 2.651 30 11447 11447 548 99.686 0.228 0.228 0.226 0.2261 0.279 0.2717 RANDOM 47.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.251 -0.626 -1.251 1.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.854 r_dihedral_angle_4_deg 16.04 r_dihedral_angle_3_deg 15.092 r_dihedral_angle_1_deg 5.932 r_mcangle_it 2.665 r_scangle_it 2.395 r_mcbond_it 1.82 r_scbond_it 1.775 r_angle_refined_deg 1.352 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.854 r_dihedral_angle_4_deg 16.04 r_dihedral_angle_3_deg 15.092 r_dihedral_angle_1_deg 5.932 r_mcangle_it 2.665 r_scangle_it 2.395 r_mcbond_it 1.82 r_scbond_it 1.775 r_angle_refined_deg 1.352 r_angle_other_deg 0.846 r_mcbond_other 0.401 r_symmetry_vdw_other 0.268 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.223 r_nbtor_refined 0.192 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.14 r_symmetry_hbond_refined 0.131 r_nbtor_other 0.085 r_chiral_restr 0.069 r_bond_refined_d 0.015 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1786 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling