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Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 296 0.1M CAPS pH 10.0, 200mM Lithium sulfate, 1.2M Sodium dihydrogen phosphate, 800mM Potassium phosphate, 10% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.23 44.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.593 α = 90 b = 58.657 β = 117.96 c = 60.301 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97930 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 99.4 0.046 0.038 9.8 3.8 37460 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.82 98.4 0.56 0.35 1.4 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 20 35959 1159 99.23 0.18872 0.18768 0.1879 0.22006 0.2197 RANDOM 40.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.68 -1.35 3.44 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.363 r_dihedral_angle_4_deg 15.184 r_dihedral_angle_3_deg 13.707 r_scangle_it 7.651 r_scbond_it 5.311 r_dihedral_angle_1_deg 5.295 r_mcangle_it 4.805 r_mcbond_it 3.233 r_angle_refined_deg 1.269 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.363 r_dihedral_angle_4_deg 15.184 r_dihedral_angle_3_deg 13.707 r_scangle_it 7.651 r_scbond_it 5.311 r_dihedral_angle_1_deg 5.295 r_mcangle_it 4.805 r_mcbond_it 3.233 r_angle_refined_deg 1.269 r_nbtor_refined 0.299 r_nbd_refined 0.16 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.13 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2755 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 18
Software Software Software Name Purpose SHELXD phasing SHELXE model building REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling