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Crystal structure of juvenile hormone binding protein from Galleria mellonella hemolymph
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 292 2.2M ammonium sulfate, 20mM sodium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.17 61.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.95 α = 90 b = 109.95 β = 90 c = 94.02 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirror 2006-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 1.00850, 1.00916, 0.8130 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 40 99.5 0.062 31.4 9.4 24890 24772 -2 57.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.44 2.53 97.3 0.538 2.8 6 2378
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD R-free 2.44 40 -2 23459 23459 1256 99.66 0.1945 0.1945 0.1909 0.1957 0.264 0.2605 RANDOM 35.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.48 0.96 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_3_deg 21.171 r_dihedral_angle_4_deg 20.893 r_dihedral_angle_1_deg 13.38 r_scangle_it 6.467 r_scbond_it 4.366 r_angle_other_deg 2.704 r_mcangle_it 1.927 r_mcbond_it 1.758 r_angle_refined_deg 1.566
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_3_deg 21.171 r_dihedral_angle_4_deg 20.893 r_dihedral_angle_1_deg 13.38 r_scangle_it 6.467 r_scbond_it 4.366 r_angle_other_deg 2.704 r_mcangle_it 1.927 r_mcbond_it 1.758 r_angle_refined_deg 1.566 r_mcbond_other 0.249 r_nbd_other 0.239 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.207 r_symmetry_vdw_other 0.196 r_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.188 r_symmetry_hbond_refined 0.143 r_nbtor_other 0.103 r_chiral_restr 0.095 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3349 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing