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Cytochrome C Peroxidase W191G in complex with 2-imino-4-methylpiperdine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AC4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 291 MES, MPD, pH 6.0, vapor diffusion, hanging drop, temperature 291K, pH 6.00
Crystal Properties Matthews coefficient Solvent content 3.13 60.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.11 α = 90 b = 75.961 β = 90 c = 106.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 KOHZU: DOUBLE CRYSTAL SI(111) 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.6 0.05 12.2 4.7 67338
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 96.5 0.334 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1AC4 1.5 30 67188 67188 3405 99.7 0.145 0.143 0.1426 0.169 0.1689 RANDOM 14.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.64 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.993 r_dihedral_angle_4_deg 24.182 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 5.465 r_sphericity_free 4.299 r_scangle_it 2.631 r_sphericity_bonded 2.582 r_scbond_it 2.001 r_mcangle_it 1.355 r_rigid_bond_restr 1.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.993 r_dihedral_angle_4_deg 24.182 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 5.465 r_sphericity_free 4.299 r_scangle_it 2.631 r_sphericity_bonded 2.582 r_scbond_it 2.001 r_mcangle_it 1.355 r_rigid_bond_restr 1.281 r_angle_refined_deg 1.223 r_mcbond_it 0.947 r_nbtor_refined 0.31 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.187 r_symmetry_hbond_refined 0.129 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2339 Nucleic Acid Atoms Solvent Atoms 510 Heterogen Atoms 61
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing