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Crystal structure of Borealin (20-78) bound to Survivin (1-120)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Survivin 1-142 (truncated to 1-120) + borealin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 0.5 ul protein plus 0.5 uL well solution consisting of 0.1 M HEPES, pH 7.5; 10% (w/v) PEG 8000; 8 % (v/v) ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.29 71.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.521 α = 90 b = 145.521 β = 90 c = 217.429 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 98.7 0.105 8.4 5.6 17601 17601 0.008 -3 80
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 98 0.462 2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Survivin 1-142 (truncated to 1-120) + borealin 3.3 29.63 -3 16882 15872 1010 94.65 0.239 0.23896 0.23625 0.2268 0.28421 0.27 Thin shells 84.719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.753 r_dihedral_angle_3_deg 21.298 r_dihedral_angle_4_deg 19.613 r_dihedral_angle_1_deg 6.213 r_mcangle_it 4.422 r_scangle_it 4.034 r_mcbond_it 2.61 r_scbond_it 2.326 r_angle_refined_deg 1.204 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.753 r_dihedral_angle_3_deg 21.298 r_dihedral_angle_4_deg 19.613 r_dihedral_angle_1_deg 6.213 r_mcangle_it 4.422 r_scangle_it 4.034 r_mcbond_it 2.61 r_scbond_it 2.326 r_angle_refined_deg 1.204 r_nbtor_refined 0.31 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.128 r_symmetry_hbond_refined 0.095 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_metal_ion_refined 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4276 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing