2RA5

Crystal structure of the putative transcriptional regulator from Streptomyces coelicolor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52950.1M Tris-HCl pH 8.5, 0.2M MgCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.51418.735

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.768α = 90
b = 43.768β = 90
c = 170.735γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2007-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97920APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45096.30.1168.320.868596859
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.42.4975.20.3842.27.4513

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.442.686124612467596.280.2250.2250.2180.292RANDOM69.685
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.151.15-2.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.176
r_dihedral_angle_3_deg21.298
r_dihedral_angle_4_deg18.799
r_scangle_it17.536
r_scbond_it13.252
r_mcangle_it10.397
r_mcbond_it8.426
r_dihedral_angle_1_deg6.616
r_angle_refined_deg1.804
r_symmetry_vdw_refined0.446
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.176
r_dihedral_angle_3_deg21.298
r_dihedral_angle_4_deg18.799
r_scangle_it17.536
r_scbond_it13.252
r_mcangle_it10.397
r_mcbond_it8.426
r_dihedral_angle_1_deg6.616
r_angle_refined_deg1.804
r_symmetry_vdw_refined0.446
r_symmetry_hbond_refined0.325
r_nbtor_refined0.316
r_nbd_refined0.281
r_xyhbond_nbd_refined0.183
r_chiral_restr0.079
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1188
Nucleic Acid Atoms
Solvent Atoms66
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXphasing
MLPHAREphasing
RESOLVEphasing