☰ Navigation Tabs
The crystal structure of the protein Atu2452 of unknown function from Agrobacterium tumefaciens str. C58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 289 0.1M Na Citrate, 0.2M K/Na Tartrate, 2.0M Ammonium sulfate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.61 52.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.904 α = 90 b = 58.727 β = 90 c = 165.155 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirror 2007-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 82.5 93.7 0.092 31.4 6.4 18017 18017 54.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.63 58.1 0.487 2.85 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.56 47.84 16993 16991 924 93.11 0.19735 0.19441 0.2525 0.2322 RANDOM 55.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.37 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.584 r_dihedral_angle_4_deg 27.195 r_dihedral_angle_3_deg 22.655 r_dihedral_angle_1_deg 7.742 r_scangle_it 3.354 r_scbond_it 2.108 r_angle_refined_deg 1.908 r_mcangle_it 1.175 r_mcbond_it 0.67 r_nbtor_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.584 r_dihedral_angle_4_deg 27.195 r_dihedral_angle_3_deg 22.655 r_dihedral_angle_1_deg 7.742 r_scangle_it 3.354 r_scbond_it 2.108 r_angle_refined_deg 1.908 r_mcangle_it 1.175 r_mcbond_it 0.67 r_nbtor_refined 0.33 r_symmetry_vdw_refined 0.274 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.133 r_symmetry_hbond_refined 0.042 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3108 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling MLPHARE phasing DM phasing HKL-3000 phasing