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Crystal structure of Gab protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JR7 PDB ENTRY 1JR7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 1.6M ammonium sulphate, 0.1M bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.35 63.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.9 α = 90 b = 120.9 β = 90 c = 137.17 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2005-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 45.4 99.9 0.131 10.5 4.9 29961 29931 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.632 2.4 4.9 4316
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 1JR7 2.1 45.36 29931 29925 1520 99.88 0.163 0.163 0.162 0.1697 0.199 0.2083 RANDOM 30.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 1.01 -2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.769 r_dihedral_angle_3_deg 13.798 r_dihedral_angle_4_deg 13.635 r_dihedral_angle_1_deg 6.189 r_scangle_it 2.552 r_scbond_it 1.85 r_angle_refined_deg 1.481 r_mcangle_it 1.269 r_mcbond_it 1.107 r_angle_other_deg 0.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.769 r_dihedral_angle_3_deg 13.798 r_dihedral_angle_4_deg 13.635 r_dihedral_angle_1_deg 6.189 r_scangle_it 2.552 r_scbond_it 1.85 r_angle_refined_deg 1.481 r_mcangle_it 1.269 r_mcbond_it 1.107 r_angle_other_deg 0.917 r_symmetry_vdw_other 0.245 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.206 r_nbd_other 0.203 r_symmetry_hbond_refined 0.19 r_mcbond_other 0.185 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.174 r_nbtor_other 0.09 r_chiral_restr 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2452 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 153
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ProDC data collection MOSFLM data reduction SCALA data scaling MOLREP phasing