☰ Navigation Tabs
Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with AMP-PNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 PEG 3350, LiSO4, pH 8.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.873 α = 90 b = 97.873 β = 90 c = 147.848 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.9 0.056 53.9 16.2 32802 32800
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 99.8 0.056 53.9 16.2 29141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 25 30966 1825 92.08 0.193 0.191 0.1902 0.215 0.2162 RANDOM 36.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.46 0.91 -1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.14 r_dihedral_angle_4_deg 16.602 r_dihedral_angle_3_deg 12.808 r_dihedral_angle_1_deg 5.565 r_scangle_it 2.066 r_scbond_it 1.402 r_angle_refined_deg 1.179 r_mcangle_it 0.847 r_mcbond_it 0.523 r_symmetry_vdw_refined 0.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.14 r_dihedral_angle_4_deg 16.602 r_dihedral_angle_3_deg 12.808 r_dihedral_angle_1_deg 5.565 r_scangle_it 2.066 r_scbond_it 1.402 r_angle_refined_deg 1.179 r_mcangle_it 0.847 r_mcbond_it 0.523 r_symmetry_vdw_refined 0.342 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.2 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2267 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction CNS phasing