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Pentamer Structure of Major Capsid Protein L1 of Human Papilloma Virus type 18
Crystallization Crystal Properties Matthews coefficient Solvent content 2.61 52.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.161 α = 87.56 b = 105.039 β = 85.66 c = 235.749 γ = 68.16
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 50 19.6 4.4 3.55 98881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.4 40 93692 4995 99.67 0.21619 0.21383 0.2038 0.26016 0.2147 RANDOM 52.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.73 -2.84 -0.97 6.31 -2.11 -2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.123 r_dihedral_angle_4_deg 21.349 r_dihedral_angle_3_deg 17.953 r_scangle_it 6.492 r_dihedral_angle_1_deg 5.053 r_scbond_it 4.875 r_mcangle_it 3.663 r_angle_refined_deg 2.761 r_mcbond_it 2.515 r_symmetry_vdw_refined 0.406
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.123 r_dihedral_angle_4_deg 21.349 r_dihedral_angle_3_deg 17.953 r_scangle_it 6.492 r_dihedral_angle_1_deg 5.053 r_scbond_it 4.875 r_mcangle_it 3.663 r_angle_refined_deg 2.761 r_mcbond_it 2.515 r_symmetry_vdw_refined 0.406 r_nbtor_refined 0.354 r_symmetry_hbond_refined 0.338 r_nbd_refined 0.281 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.163 r_bond_refined_d 0.041 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49845 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement