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Fungal lectin CGL3 in complex with chitotriose (chitotetraose)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ULD PDB ENTRY 1ULD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 0.1M sodium citrate, 0.9M lithium sulfate, 0.5M ammonium sulfate, pH5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.12 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.9 α = 73 b = 59.7 β = 90.7 c = 60.2 γ = 76.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.966 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 82.5 0.057 0.064 11.59 2.5 68005 56130 3 22.579
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 49.9 0.171 0.176 7.32 1.3 5343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ULD 1.9 14.92 43261 43261 2325 93.8 0.19791 0.19482 0.205 0.25374 0.2577 RANDOM 23.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.748 r_scangle_it 15.962 r_scbond_it 12.995 r_mcangle_it 7.886 r_mcbond_it 7.078 r_dihedral_angle_3_deg 5.965 r_dihedral_angle_4_deg 5.841 r_angle_refined_deg 2.133 r_dihedral_angle_1_deg 1.371 r_nbtor_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.748 r_scangle_it 15.962 r_scbond_it 12.995 r_mcangle_it 7.886 r_mcbond_it 7.078 r_dihedral_angle_3_deg 5.965 r_dihedral_angle_4_deg 5.841 r_angle_refined_deg 2.133 r_dihedral_angle_1_deg 1.371 r_nbtor_refined 0.341 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.27 r_chiral_restr 0.267 r_symmetry_hbond_refined 0.246 r_xyhbond_nbd_refined 0.215 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5129 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction PHASER phasing