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The crystal structure of a conserved protein of unknown function from Streptococcus thermophilus LMG 18311.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 35% Tacsimate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.5 64.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.783 α = 90 b = 150.783 β = 90 c = 103.247 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.23 99.2 0.095 54.3 18 35201 35201 45.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 92.7 0.63 4.1 14.3 2143
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 36.23 33315 33315 1755 98.76 0.21229 0.21229 0.21025 0.25112 RANDOM 75.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.4 -0.81 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.24 r_dihedral_angle_4_deg 20.347 r_dihedral_angle_3_deg 19.655 r_dihedral_angle_1_deg 8.482 r_scangle_it 4.788 r_scbond_it 3.089 r_angle_refined_deg 1.961 r_mcangle_it 1.76 r_mcbond_it 0.999 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.24 r_dihedral_angle_4_deg 20.347 r_dihedral_angle_3_deg 19.655 r_dihedral_angle_1_deg 8.482 r_scangle_it 4.788 r_scbond_it 3.089 r_angle_refined_deg 1.961 r_mcangle_it 1.76 r_mcbond_it 0.999 r_nbtor_refined 0.31 r_nbd_refined 0.241 r_symmetry_hbond_refined 0.188 r_symmetry_vdw_refined 0.178 r_chiral_restr 0.169 r_xyhbond_nbd_refined 0.154 r_metal_ion_refined 0.083 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3298 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing