☰ Navigation Tabs
Crystal structure of Mycobacterium tuberculosis Leucine response regulatory protein (LrpA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 291.5 70mM Sodium acetate, 20% Glycerol, 5.6% PEG 4000, pH 6.0, VAPOR DIFFUSION, temperature 291.5K
Crystal Properties Matthews coefficient Solvent content 2.57 52.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.284 α = 90 b = 149.9 β = 90 c = 62.506 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 4 2003-06-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.96400, 1.00000 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 105.41 99 0.0261 30.1 1.88 67785 27.273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.26 89.8 0.0521 0.055 16.7 1.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.16 29.09 67785 3781 95.7 0.2156 0.2156 0.2103 0.255 RANDOM 30.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.4 0.6
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.056 f_angle_deg 0.743 f_bond_d 0.005 f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d f_improper_angle_d_na f_improper_angle_d_prot
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.056 f_angle_deg 0.743 f_bond_d 0.005 f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d f_improper_angle_d_na f_improper_angle_d_prot f_mcbond_it f_mcangle_it f_scbond_it f_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4532 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing