X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52980.1M bis-Tris, 20% PEG3350, 0.3M NaCl, pH 6.5, vapor diffusion, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.0840.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.428α = 90
b = 107.444β = 96.51
c = 72.264γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-09-14MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.97944, 0.979617, 0.975593ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.490980.1296.43.35253752537-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.419.930053151178.920.2430.240.296RANDOM22.143
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.020.03-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.342
r_dihedral_angle_3_deg18.684
r_dihedral_angle_4_deg14.569
r_scangle_it4.945
r_dihedral_angle_1_deg4.014
r_scbond_it3.756
r_mcangle_it3.532
r_mcbond_it2.713
r_angle_refined_deg2.404
r_angle_other_deg2.353
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.342
r_dihedral_angle_3_deg18.684
r_dihedral_angle_4_deg14.569
r_scangle_it4.945
r_dihedral_angle_1_deg4.014
r_scbond_it3.756
r_mcangle_it3.532
r_mcbond_it2.713
r_angle_refined_deg2.404
r_angle_other_deg2.353
r_symmetry_vdw_refined0.287
r_symmetry_hbond_refined0.286
r_symmetry_vdw_other0.283
r_xyhbond_nbd_refined0.262
r_mcbond_other0.244
r_nbd_other0.243
r_nbd_refined0.224
r_nbtor_refined0.18
r_chiral_restr0.136
r_xyhbond_nbd_other0.119
r_nbtor_other0.107
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7155
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction