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Crystal structure of putative glyoxalase family protein from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.2M Ammonium sulfate, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.57 52.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.314 α = 90 b = 53.262 β = 90 c = 108.115 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2007-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97850 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 29.85 98.9 0.083 8.6 8.1 25719 25719
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.93 98.3 0.776 4.4 6.3 2503
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 29.85 20804 20804 2354 97.48 0.2 0.2 0.196 0.1956 0.236 0.236 RANDOM 46.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.04 -0.91 -2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.808 r_dihedral_angle_4_deg 19.334 r_dihedral_angle_3_deg 18.53 r_dihedral_angle_1_deg 6.414 r_scangle_it 4.495 r_scbond_it 2.907 r_mcangle_it 1.758 r_angle_refined_deg 1.723 r_mcbond_it 1.171 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.808 r_dihedral_angle_4_deg 19.334 r_dihedral_angle_3_deg 18.53 r_dihedral_angle_1_deg 6.414 r_scangle_it 4.495 r_scbond_it 2.907 r_mcangle_it 1.758 r_angle_refined_deg 1.723 r_mcbond_it 1.171 r_nbtor_refined 0.316 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.203 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.117 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1994 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXCD phasing SHELXE model building MLPHARE phasing RESOLVE phasing