2QPJ

Human NEP complexed with a bifunctional NEP/DPP IV inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.529425% PEG 3350, 200mM ammonium sulfate, pH 7.5, VAPOR DIFFUSION, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.3447.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.123α = 90
b = 107.123β = 90
c = 112.375γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm platemirrors2003-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5911.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.052093.20.06210.7439554395511
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.1285.60.5150.5151.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DTM2.0520114395541720222793.270.209760.206720.26766RANDOM34.342
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.040.08-0.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.684
r_scangle_it1.659
r_mcangle_it1.634
r_scbond_it1.016
r_mcbond_it0.994
r_angle_refined_deg0.737
r_angle_other_deg0.542
r_symmetry_vdw_other0.478
r_symmetry_hbond_refined0.476
r_symmetry_vdw_refined0.474
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.684
r_scangle_it1.659
r_mcangle_it1.634
r_scbond_it1.016
r_mcbond_it0.994
r_angle_refined_deg0.737
r_angle_other_deg0.542
r_symmetry_vdw_other0.478
r_symmetry_hbond_refined0.476
r_symmetry_vdw_refined0.474
r_nbd_other0.286
r_nbd_refined0.252
r_xyhbond_nbd_refined0.213
r_metal_ion_refined0.127
r_nbtor_other0.094
r_chiral_restr0.04
r_bond_refined_d0.005
r_bond_other_d0.005
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5595
Nucleic Acid Atoms
Solvent Atoms291
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
MAR345dtbdata collection
DENZOdata reduction
SCALEPACKdata scaling
MERLOTphasing