X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6277NANODROP, 0.14M CaCl2, 30.0% Glycerol, 14.0% Isopropanol, 0.1M Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7555.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.673α = 90
b = 73.673β = 90
c = 367.524γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2007-06-03MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97905, 0.97920, 0.91837SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4629.60499.80.1310.1315.26.422684
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.462.5299.80.7330.73313.61588

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.4629.60422598115999.660.2330.2310.275RANDOM41.163
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.12-0.06-0.120.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.802
r_dihedral_angle_4_deg10.641
r_dihedral_angle_3_deg8.468
r_dihedral_angle_1_deg2.746
r_scangle_it2.71
r_scbond_it1.846
r_angle_refined_deg1.371
r_angle_other_deg1.169
r_mcangle_it1.093
r_mcbond_it0.631
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.802
r_dihedral_angle_4_deg10.641
r_dihedral_angle_3_deg8.468
r_dihedral_angle_1_deg2.746
r_scangle_it2.71
r_scbond_it1.846
r_angle_refined_deg1.371
r_angle_other_deg1.169
r_mcangle_it1.093
r_mcbond_it0.631
r_nbtor_refined0.139
r_nbd_refined0.127
r_symmetry_vdw_refined0.124
r_nbd_other0.117
r_symmetry_vdw_other0.095
r_mcbond_other0.087
r_chiral_restr0.081
r_nbtor_other0.066
r_xyhbond_nbd_refined0.04
r_symmetry_metal_ion_refined0.036
r_symmetry_hbond_refined0.03
r_metal_ion_refined0.02
r_bond_refined_d0.011
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3578
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
SCALAdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
MOSFLMdata reduction
SHELXDphasing
SOLVEphasing